AC008694.1 (SRY (sex determining region Y)-box 30 (Sox30) pseudogene) - Rat Genome Database

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Gene: AC008694.1 (SRY (sex determining region Y)-box 30 (Sox30) pseudogene) Homo sapiens
Analyze
Symbol: AC008694.1
Name: SRY (sex determining region Y)-box 30 (Sox30) pseudogene
RGD ID: 16559939
Description:
Type: transcribed_unprocessed_pseudogene
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl5157,682,985 - 157,690,878 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:235
Count of miRNA genes:228
Interacting mature miRNAs:232
Transcripts:ENST00000522076
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 1 359
Low 15 1 8 2 14 2 12 6 2 1 24 9 4 7
Below cutoff 678 455 353 91 358 66 610 331 716 43 199 262 26 190 395 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000522076
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5157,682,985 - 157,690,266 (-)Ensembl
RefSeq Acc Id: ENST00000636953
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5157,689,934 - 157,690,878 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC008694.1 COSMIC
Ensembl Genes ENSG00000253798 Ensembl
GTEx ENSG00000253798 GTEx
Human Proteome Map AC008694.1 Human Proteome Map