AC009185.1 (novel transcript) - Rat Genome Database

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Gene: AC009185.1 (novel transcript) Homo sapiens
Analyze
Symbol: AC009185.1
Name: novel transcript
RGD ID: 16559865
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl5157,260,122 - 157,266,625 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:105
Count of miRNA genes:105
Interacting mature miRNAs:105
Transcripts:ENST00000517634
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1
Low 13 26 194 12 401 12 10 17 382 184 85 54 1 2 1
Below cutoff 367 563 560 217 640 210 480 198 2111 151 482 433 10 58 218 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000517634
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5157,260,122 - 157,266,625 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC009185.1 COSMIC
Ensembl Genes ENSG00000253653 Ensembl
GTEx ENSG00000253653 GTEx
Human Proteome Map AC009185.1 Human Proteome Map