AC090192.2 (novel transcript) - Rat Genome Database

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Gene: AC090192.2 (novel transcript) Homo sapiens
Analyze
Symbol: AC090192.2
Name: novel transcript
RGD ID: 16559652
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl8124,271,667 - 124,279,580 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:177
Count of miRNA genes:169
Interacting mature miRNAs:176
Transcripts:ENST00000517482
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 1 4 4 4 7 8 1 2 12 6
Low 89 79 110 49 21 50 357 372 63 50 67 106 8 3 302
Below cutoff 330 610 292 97 285 63 704 620 498 92 401 198 37 146 502

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000517482
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl8124,271,667 - 124,277,839 (+)Ensembl
RefSeq Acc Id: ENST00000660335
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl8124,271,715 - 124,277,839 (+)Ensembl
RefSeq Acc Id: ENST00000668271
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl8124,271,715 - 124,279,580 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC090192.2 COSMIC
Ensembl Genes ENSG00000253227 Ensembl
GTEx ENSG00000253227 GTEx
Human Proteome Map AC090192.2 Human Proteome Map