Y_RNA (Y RNA) - Rat Genome Database

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Gene: Y_RNA (Y RNA) Homo sapiens
Analyze
Symbol: Y_RNA
Name: Y RNA
RGD ID: 16559551
Description:
Type: misc_rna
Previously known as: AC108471.2
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl439,710,085 - 39,710,176 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:156
Count of miRNA genes:155
Interacting mature miRNAs:155
Transcripts:ENST00000517166
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 8 1 1
Low 64 35 53 27 139 27 179 29 73 39 67 58 18 68 1
Below cutoff 45 41 23 12 28 3 116 35 59 8 26 22 9 21 70

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000517166
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl439,710,085 - 39,710,176 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC Y_RNA COSMIC
Ensembl Genes ENSG00000252975 Ensembl
GTEx ENSG00000252975 GTEx
Human Proteome Map Y_RNA Human Proteome Map


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-08-20 Y_RNA  Y RNA  AC108471.2    Symbol and/or name change 19259462 PROVISIONAL
2020-02-07 AC108471.2    Y_RNA  Y RNA  Symbol and/or name change 19259462 PROVISIONAL