AC016571.1 (novel transcript, sense overlapping ADAM19) - Rat Genome Database

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Gene: AC016571.1 (novel transcript, sense overlapping ADAM19) Homo sapiens
Analyze
Symbol: AC016571.1
Name: novel transcript, sense overlapping ADAM19
RGD ID: 16559237
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl5157,363,382 - 157,365,501 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:455
Count of miRNA genes:372
Interacting mature miRNAs:403
Transcripts:ENST00000509655, ENST00000519499
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 189 87 12 83 53 1 3 10 83
Low 1247 1253 135 7 669 8 757 588 1195 36 227 307 1 118 649
Below cutoff 891 1599 1405 479 975 342 3080 1344 2482 265 1013 1131 143 996 1834 3

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000509655
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5157,363,382 - 157,365,501 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC016571.1 COSMIC
Ensembl Genes ENSG00000251405 Ensembl
GTEx ENSG00000251405 GTEx
Human Proteome Map AC016571.1 Human Proteome Map