AC091180.4 (novel transcript) - Rat Genome Database

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Gene: AC091180.4 (novel transcript) Homo sapiens
Analyze
Symbol: AC091180.4
Name: novel transcript
RGD ID: 16559064
Description:
Type: lncrna
Previously known as: AC091180.5
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1749,375,380 - 49,380,094 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:179
Count of miRNA genes:157
Interacting mature miRNAs:162
Transcripts:ENST00000511322
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2 38 4 3
Low 990 523 371 115 1206 75 904 350 2015 115 824 534 44 126 591
Below cutoff 889 1046 688 231 373 152 1417 600 1347 165 355 585 82 509 821 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000511322
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1749,375,380 - 49,380,094 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC091180.4 COSMIC
Ensembl Genes ENSG00000250948 Ensembl
GTEx ENSG00000250948 GTEx
Human Proteome Map AC091180.4 Human Proteome Map


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-08-20 AC091180.4  novel transcript  AC091180.5  novel transcript  Symbol and/or name change 19259462 PROVISIONAL
2020-02-07 AC091180.5  novel transcript  AC091180.4  novel transcript  Symbol and/or name change 19259462 PROVISIONAL