MAD2L1-DT (MAD2L1 divergent transcript) - Rat Genome Database

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Gene: MAD2L1-DT (MAD2L1 divergent transcript) Homo sapiens
Analyze
Symbol: MAD2L1-DT (Ensembl: AC073475.1)
Name: MAD2L1 divergent transcript (Ensembl:novel transcript, antisense to MAD2L1)
RGD ID: 16559059
Description:
Type: lncrna
Previously known as: AC073475.1; novel transcript, antisense to MAD2L1
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl4120,066,958 - 120,564,789 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:386
Count of miRNA genes:365
Interacting mature miRNAs:375
Transcripts:ENST00000503073, ENST00000504106, ENST00000508362, ENST00000511064
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium
Low 11 12 9 3 127 2 10 13 44 12 65 27 3 1 2 2
Below cutoff 2131 2326 1445 394 1073 256 3868 2088 3422 340 1256 1462 151 1 1136 2556 3

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000503073
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4120,066,958 - 120,085,579 (+)Ensembl
RefSeq Acc Id: ENST00000504106
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4120,066,970 - 120,393,722 (+)Ensembl
RefSeq Acc Id: ENST00000508362
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4120,067,511 - 120,416,766 (+)Ensembl
RefSeq Acc Id: ENST00000511064
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4120,066,958 - 120,165,970 (+)Ensembl
RefSeq Acc Id: ENST00000653046
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4120,262,185 - 120,564,789 (+)Ensembl
RefSeq Acc Id: ENST00000686551
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4120,066,955 - 120,367,974 (+)Ensembl
RefSeq Acc Id: ENST00000691548
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4120,066,944 - 120,393,773 (+)Ensembl
RefSeq Acc Id: ENST00000693125
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4120,066,962 - 120,419,576 (+)Ensembl
RefSeq Acc Id: ENST00000693300
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4120,066,904 - 120,151,122 (+)Ensembl
RefSeq Acc Id: ENST00000700800
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4120,066,977 - 120,067,660 (+)Ensembl
RefSeq Acc Id: ENST00000701263
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4120,066,964 - 120,433,105 (+)Ensembl
RefSeq Acc Id: ENST00000701838
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4120,066,962 - 120,151,123 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC MAD2L1-DT COSMIC
Ensembl Genes ENSG00000250938 Ensembl
GTEx ENSG00000250938 GTEx
Human Proteome Map MAD2L1-DT Human Proteome Map


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-29 MAD2L1-DT  MAD2L1 divergent transcript  AC073475.1  novel transcript, antisense to MAD2L1  Symbol and/or name change 19259463 PROVISIONAL