AC016924.1 (novel transcript) - Rat Genome Database

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Gene: AC016924.1 (novel transcript) Homo sapiens
Analyze
Symbol: AC016924.1
Name: novel transcript
RGD ID: 16559058
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl3126,266,747 - 126,291,525 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:473
Count of miRNA genes:400
Interacting mature miRNAs:425
Transcripts:ENST00000511512, ENST00000512435
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component
High
Medium 6 57 4 3 1 3 302 12 208 43 19 1 67 243
Low 1631 1892 519 292 147 266 2964 1716 3145 269 921 681 28 1 1083 2004 2
Below cutoff 619 349 1026 281 402 161 948 425 307 74 439 693 130 51 502 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000511512
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3126,266,754 - 126,291,525 (+)Ensembl
RefSeq Acc Id: ENST00000512435
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3126,266,817 - 126,288,417 (+)Ensembl
RefSeq Acc Id: ENST00000654226
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3126,287,705 - 126,291,525 (+)Ensembl
RefSeq Acc Id: ENST00000656027
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3126,278,167 - 126,291,525 (+)Ensembl
RefSeq Acc Id: ENST00000661791
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3126,284,453 - 126,288,219 (+)Ensembl
RefSeq Acc Id: ENST00000665278
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3126,278,239 - 126,281,742 (+)Ensembl
RefSeq Acc Id: ENST00000666921
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3126,266,747 - 126,291,518 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC016924.1 COSMIC
Ensembl Genes ENSG00000250934 Ensembl
GTEx ENSG00000250934 GTEx
Human Proteome Map AC016924.1 Human Proteome Map