AC139718.1 (novel transcript) - Rat Genome Database

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Gene: AC139718.1 (novel transcript) Homo sapiens
Analyze
Symbol: AC139718.1
Name: novel transcript
RGD ID: 16559030
Description:
Type: lncrna
Previously known as: AC139718.2
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl4111,802,795 - 111,839,886 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p14 Ensembl4111,802,801 - 111,839,886 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:64
Count of miRNA genes:62
Interacting mature miRNAs:62
Transcripts:ENST00000506068
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 8 3 5 1 8 1 13 2 1 11 18 22 2 1 1
Below cutoff 50 20 46 21 58 21 102 37 45 53 268 85 1 9 28

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000506068
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4111,802,801 - 111,839,886 (+)Ensembl
RefSeq Acc Id: ENST00000680292
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4111,802,795 - 111,804,976 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC139718.1 COSMIC
Ensembl Genes ENSG00000250855 Ensembl
GTEx ENSG00000250855 GTEx
Human Proteome Map AC139718.1 Human Proteome Map


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-02-23 AC139718.1  novel transcript  AC139718.2  novel transcript  Symbol and/or name change 19259462 PROVISIONAL