AC008525.1 (novel transcript) - Rat Genome Database

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Gene: AC008525.1 (novel transcript) Homo sapiens
Analyze
Symbol: AC008525.1
Name: novel transcript
RGD ID: 16558848
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl588,691,757 - 88,695,041 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:278
Count of miRNA genes:262
Interacting mature miRNAs:272
Transcripts:ENST00000508719
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 1 1 17 1 1
Low 1 1 2 1 12 1 151 152 1247 1 10 3 1 150
Below cutoff 111 194 103 14 150 6 643 493 1157 12 205 136 9 91 560

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000508719
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,692,645 - 88,693,972 (-)Ensembl
RefSeq Acc Id: ENST00000653354
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,691,761 - 88,694,008 (-)Ensembl
RefSeq Acc Id: ENST00000659756
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,691,761 - 88,694,049 (-)Ensembl
RefSeq Acc Id: ENST00000663453
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,691,757 - 88,694,898 (-)Ensembl
RefSeq Acc Id: ENST00000666338
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl588,691,797 - 88,695,041 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC008525.1 COSMIC
Ensembl Genes ENSG00000250377 Ensembl
GTEx ENSG00000250377 GTEx
Human Proteome Map AC008525.1 Human Proteome Map