AC025754.1 (novel transcript) - Rat Genome Database

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Gene: AC025754.1 (novel transcript) Homo sapiens
Analyze
Symbol: AC025754.1
Name: novel transcript
RGD ID: 16558791
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl534,656,412 - 34,657,250 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:502
Count of miRNA genes:392
Interacting mature miRNAs:435
Transcripts:ENST00000507566
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1
Low 156 164 84 15 259 8 358 82 169 48 227 238 9 91 170 3
Below cutoff 487 393 330 99 123 55 824 278 485 149 356 479 51 272 437 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000507566
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl534,656,412 - 34,657,250 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC025754.1 COSMIC
Ensembl Genes ENSG00000250234 Ensembl
GTEx ENSG00000250234 GTEx
Human Proteome Map AC025754.1 Human Proteome Map