AC090519.1 (glyceraldehyde-3-phosphate dehydrogenase (GAPDH) pseudogene) - Rat Genome Database

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Gene: AC090519.1 (glyceraldehyde-3-phosphate dehydrogenase (GAPDH) pseudogene) Homo sapiens
Analyze
Symbol: AC090519.1
Name: glyceraldehyde-3-phosphate dehydrogenase (GAPDH) pseudogene
RGD ID: 16558754
Description:
Type: processed_pseudogene
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1544,354,691 - 44,355,692 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:485
Count of miRNA genes:420
Interacting mature miRNAs:440
Transcripts:ENST00000360440, ENST00000508195
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 282 117 402 30 447 27 236 116 453 67 566 235 13 30 110 2
Below cutoff 1845 1905 1055 411 1147 284 2873 1441 1992 240 762 1138 129 820 1799 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000508195
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1544,354,691 - 44,355,692 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC090519.1 COSMIC
Ensembl Genes ENSG00000250130 Ensembl
GTEx ENSG00000250130 GTEx
Human Proteome Map AC090519.1 Human Proteome Map