AC106795.2 (novel transcript, antisense to PROP1) - Rat Genome Database

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Gene: AC106795.2 (novel transcript, antisense to PROP1) Homo sapiens
Analyze
Symbol: AC106795.2
Name: novel transcript, antisense to PROP1
RGD ID: 16558577
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl5177,950,335 - 177,963,960 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:757
Count of miRNA genes:417
Interacting mature miRNAs:457
Transcripts:ENST00000366189, ENST00000502514, ENST00000503263, ENST00000507072
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 6 585 17 529 1 427 408
Low 1257 782 781 517 1466 358 2063 554 1879 240 868 979 169 375 1119 4
Below cutoff 1138 2040 333 94 389 95 2172 1592 1274 167 149 218 1 794 1577

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000366189
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5177,951,948 - 177,960,149 (+)Ensembl
RefSeq Acc Id: ENST00000502514
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5177,950,335 - 177,957,750 (+)Ensembl
RefSeq Acc Id: ENST00000503263
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5177,953,165 - 177,957,759 (+)Ensembl
RefSeq Acc Id: ENST00000507072
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5177,951,413 - 177,963,960 (+)Ensembl
RefSeq Acc Id: ENST00000659722
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5177,953,034 - 177,959,802 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC106795.2 COSMIC
Ensembl Genes ENSG00000249684 Ensembl
GTEx ENSG00000249684 GTEx
Human Proteome Map AC106795.2 Human Proteome Map