AC010307.3 (novel transcript) - Rat Genome Database

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Gene: AC010307.3 (novel transcript) Homo sapiens
Analyze
Symbol: AC010307.3
Name: novel transcript
RGD ID: 16558518
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl5133,243,764 - 133,248,781 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:455
Count of miRNA genes:386
Interacting mature miRNAs:408
Transcripts:ENST00000504312, ENST00000515122
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 1 1 2 1 239 2 1
Below cutoff 296 452 305 54 322 26 1312 325 1935 47 294 275 28 156 837

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000504312
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5133,243,764 - 133,246,931 (+)Ensembl
RefSeq Acc Id: ENST00000515122
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5133,243,951 - 133,248,781 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC010307.3 COSMIC
Ensembl Genes ENSG00000249478 Ensembl
GTEx ENSG00000249478 GTEx
Human Proteome Map AC010307.3 Human Proteome Map