AC093821.1 (novel transcript) - Rat Genome Database

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Gene: AC093821.1 (novel transcript) Homo sapiens
Analyze
Symbol: AC093821.1
Name: novel transcript
RGD ID: 16558397
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl4123,490,242 - 123,522,106 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:131
Count of miRNA genes:128
Interacting mature miRNAs:131
Transcripts:ENST00000503950
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 1 1 2 1 15 1
Low 86 9 52 24 174 26 207 58 76 48 360 187 8 2 22 4
Below cutoff 505 277 353 114 144 80 1367 641 649 138 347 467 36 316 892

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000503950
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4123,490,268 - 123,522,106 (+)Ensembl
RefSeq Acc Id: ENST00000664210
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4123,490,251 - 123,499,998 (+)Ensembl
RefSeq Acc Id: ENST00000667633
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4123,490,242 - 123,504,757 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC093821.1 COSMIC
Ensembl Genes ENSG00000249125 Ensembl
GTEx ENSG00000249125 GTEx
Human Proteome Map AC093821.1 Human Proteome Map