AC051649.1 (novel transcript, sense overlapping LSP1) - Rat Genome Database

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Gene: AC051649.1 (novel transcript, sense overlapping LSP1) Homo sapiens
Analyze
Symbol: AC051649.1
Name: novel transcript, sense overlapping LSP1
RGD ID: 16558381
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl111,864,177 - 1,866,667 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:663
Count of miRNA genes:518
Interacting mature miRNAs:557
Transcripts:ENST00000509204, ENST00000516378
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 5
Low 561 377 351 28 356 11 348 391 157 21 270 123 17 240 263
Below cutoff 508 585 184 85 342 59 518 508 187 33 186 157 26 195 368 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000509204
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl111,864,177 - 1,866,667 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC051649.1 COSMIC
Ensembl Genes ENSG00000249086 Ensembl
GTEx ENSG00000249086 GTEx
Human Proteome Map AC051649.1 Human Proteome Map