AC027627.1 (novel transcript) - Rat Genome Database

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Gene: AC027627.1 (novel transcript) Homo sapiens
Analyze
Symbol: AC027627.1
Name: novel transcript
RGD ID: 16558379
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl4177,343,004 - 177,357,032 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:99
Count of miRNA genes:99
Interacting mature miRNAs:99
Transcripts:ENST00000506895
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 10
Low 45 14 33 26 233 26 99 10 43 27 410 110 5 3
Below cutoff 207 99 235 144 272 129 513 49 285 56 156 179 17 52 189 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000506895
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4177,343,004 - 177,357,032 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC027627.1 COSMIC
Ensembl Genes ENSG00000249084 Ensembl
GTEx ENSG00000249084 GTEx
Human Proteome Map AC027627.1 Human Proteome Map