AC114956.2 (novel transcript) - Rat Genome Database

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Gene: AC114956.2 (novel transcript) Homo sapiens
Analyze
Symbol: AC114956.2
Name: novel transcript
RGD ID: 16558189
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl543,511,058 - 43,521,811 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:314
Count of miRNA genes:297
Interacting mature miRNAs:307
Transcripts:ENST00000512498
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 1 3 5 9 3 3 25 15 6
Low 1008 643 1305 203 773 132 2762 437 1532 204 1272 1301 78 661 1479 4
Below cutoff 1353 1965 372 371 755 288 1268 1382 2033 179 141 276 82 529 994

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000512498
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl543,511,058 - 43,521,811 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC114956.2 COSMIC
Ensembl Genes ENSG00000248554 Ensembl
GTEx ENSG00000248554 GTEx
Human Proteome Map AC114956.2 Human Proteome Map