AC010265.1 (heat shock factor binding protein 1 (HSBP1) pseudogene) - Rat Genome Database

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Gene: AC010265.1 (heat shock factor binding protein 1 (HSBP1) pseudogene) Homo sapiens
Analyze
Symbol: AC010265.1
Name: heat shock factor binding protein 1 (HSBP1) pseudogene
RGD ID: 16558117
Description:
Type: processed_pseudogene
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl5112,363,456 - 112,363,666 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:185
Count of miRNA genes:179
Interacting mature miRNAs:180
Transcripts:ENST00000513509
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1
Low 12 23 31 10 26 10 51 10 23 12 33 36 23 22 1
Below cutoff 117 138 142 21 44 8 280 105 111 44 140 186 13 115 138 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000513509
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5112,363,456 - 112,363,666 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC010265.1 COSMIC
Ensembl Genes ENSG00000248350 Ensembl
GTEx ENSG00000248350 GTEx
Human Proteome Map AC010265.1 Human Proteome Map