AC010307.2 (novel transcript) - Rat Genome Database

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Gene: AC010307.2 (novel transcript) Homo sapiens
Analyze
Symbol: AC010307.2
Name: novel transcript
RGD ID: 16558090
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl5133,160,438 - 133,224,413 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:270
Count of miRNA genes:225
Interacting mature miRNAs:229
Transcripts:ENST00000502776, ENST00000509051
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 16 4 23 10 99 10 748 3 38 27 390 76 1 430
Below cutoff 463 464 556 138 580 85 1132 283 1578 166 342 397 57 148 548 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000502776
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5133,209,993 - 133,224,413 (+)Ensembl
RefSeq Acc Id: ENST00000509051
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5133,160,438 - 133,224,303 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC010307.2 COSMIC
Ensembl Genes ENSG00000248245 Ensembl
GTEx ENSG00000248245 GTEx
Human Proteome Map AC010307.2 Human Proteome Map