AC008885.1 (pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish) pseudogene) - Rat Genome Database

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Gene: AC008885.1 (pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish) pseudogene) Homo sapiens
Analyze
Symbol: AC008885.1
Name: pancreatic progenitor cell differentiation and proliferation factor homolog (zebrafish) pseudogene
RGD ID: 16558045
Description:
Type: processed_pseudogene
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl582,824,884 - 82,825,184 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:187
Count of miRNA genes:178
Interacting mature miRNAs:187
Transcripts:ENST00000514930
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 5 121 10 5 21 5 50 3 4 2 18 29 10 31
Below cutoff 80 401 95 27 38 16 445 92 149 25 154 201 15 95 298 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000514930
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl582,824,884 - 82,825,184 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC008885.1 COSMIC
Ensembl Genes ENSG00000248105 Ensembl
GTEx ENSG00000248105 GTEx
Human Proteome Map AC008885.1 Human Proteome Map