GNAO1-DT (GNAO1 divergent transcript) - Rat Genome Database

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Gene: GNAO1-DT (GNAO1 divergent transcript) Homo sapiens
Analyze
Symbol: GNAO1-DT
Name: GNAO1 divergent transcript
RGD ID: 16557988
HGNC Page HGNC:27543
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: AC040168.1; GNAO1-AS1; LOC283856; uncharacterized LOC283856
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381656,092,987 - 56,191,094 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1655,984,009 - 56,194,518 (-)EnsemblGRCh38hg38GRCh38
GRCh371656,126,899 - 56,225,006 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map16q13NCBI
HuRef1641,997,772 - 42,095,882 (-)NCBIHuRef
CHM1_11657,534,270 - 57,632,367 (-)NCBICHM1_1
T2T-CHM13v2.01661,888,031 - 61,986,139 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:12477932  


Genomics

Variants

.
Variants in GNAO1-DT
6 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
Single allele duplication not provided [RCV001542388] Chr16:46385317..61223349 [GRCh38]
Chr16:16q11.2-21		 pathogenic
GRCh38/hg38 16q12.1-22.1(chr16:49685521-68401712)x3 copy number gain See cases [RCV000143752] Chr16:49685521..68401712 [GRCh38]
Chr16:49719432..68435615 [GRCh37]
Chr16:48276933..66993116 [NCBI36]
Chr16:16q12.1-22.1		 pathogenic
GRCh38/hg38 16q12.2-24.3(chr16:52899183-90088654)x3 copy number gain See cases [RCV000143425] Chr16:52899183..90088654 [GRCh38]
Chr16:52933095..90155062 [GRCh37]
Chr16:51490596..88682563 [NCBI36]
Chr16:16q12.2-24.3		 pathogenic
NC_000016.10:g.56191028G>A single nucleotide variant not provided [RCV001572116] Chr16:56191028 [GRCh38]
Chr16:56224940 [GRCh37]
Chr16:16q13		 likely benign
GRCh38/hg38 16q12.2-21(chr16:55457477-63841622)x1 copy number loss See cases [RCV000133738] Chr16:55457477..63841622 [GRCh38]
Chr16:55491389..63875526 [GRCh37]
Chr16:54048890..62433027 [NCBI36]
Chr16:16q12.2-21		 pathogenic
Single allele deletion not provided [RCV002266766] Chr16:53818483..57631312 [GRCh38]
Chr16:16q12.2-21		 pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:349
Count of miRNA genes:308
Interacting mature miRNAs:327
Transcripts:ENST00000501259, ENST00000565155, ENST00000567929, ENST00000569025
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
1199 2363 2709 2232 4866 1635 2134 4 548 1038 393 2201 6038 5485 50 3705 713 1646 1474 167

Sequence


Ensembl Acc Id: ENST00000501259
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1656,092,987 - 56,191,094 (-)Ensembl
Ensembl Acc Id: ENST00000565155
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1656,143,314 - 56,189,601 (-)Ensembl
Ensembl Acc Id: ENST00000565441
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1656,183,726 - 56,186,306 (-)Ensembl
Ensembl Acc Id: ENST00000567929
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1656,187,074 - 56,188,078 (-)Ensembl
Ensembl Acc Id: ENST00000569025
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1656,169,679 - 56,190,007 (-)Ensembl
Ensembl Acc Id: ENST00000648729
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1656,183,605 - 56,189,597 (-)Ensembl
Ensembl Acc Id: ENST00000654562
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1656,183,610 - 56,188,113 (-)Ensembl
Ensembl Acc Id: ENST00000657483
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1655,984,009 - 55,993,673 (-)Ensembl
Ensembl Acc Id: ENST00000661960
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1656,143,694 - 56,188,140 (-)Ensembl
Ensembl Acc Id: ENST00000662188
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1656,101,129 - 56,191,118 (-)Ensembl
Ensembl Acc Id: ENST00000662870
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1656,143,707 - 56,186,324 (-)Ensembl
Ensembl Acc Id: ENST00000663751
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1655,991,504 - 56,162,084 (-)Ensembl
Ensembl Acc Id: ENST00000664309
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1656,101,089 - 56,190,338 (-)Ensembl
Ensembl Acc Id: ENST00000665141
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1656,101,090 - 56,191,609 (-)Ensembl
Ensembl Acc Id: ENST00000668774
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1655,991,744 - 56,076,647 (-)Ensembl
Ensembl Acc Id: ENST00000715694
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1656,141,830 - 56,194,518 (-)Ensembl
Ensembl Acc Id: ENST00000825388
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1656,101,090 - 56,192,764 (-)Ensembl
Ensembl Acc Id: ENST00000825389
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1656,101,090 - 56,192,754 (-)Ensembl
Ensembl Acc Id: ENST00000825390
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1656,101,090 - 56,191,825 (-)Ensembl
Ensembl Acc Id: ENST00000825391
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1656,101,089 - 56,191,781 (-)Ensembl
Ensembl Acc Id: ENST00000825392
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1656,101,095 - 56,191,785 (-)Ensembl
Ensembl Acc Id: ENST00000825393
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1656,101,090 - 56,191,613 (-)Ensembl
Ensembl Acc Id: ENST00000825394
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1656,101,089 - 56,191,605 (-)Ensembl
Ensembl Acc Id: ENST00000825395
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1656,101,096 - 56,191,605 (-)Ensembl
Ensembl Acc Id: ENST00000825396
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1656,101,095 - 56,191,595 (-)Ensembl
Ensembl Acc Id: ENST00000825397
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1656,101,092 - 56,191,071 (-)Ensembl
Ensembl Acc Id: ENST00000825398
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1656,101,090 - 56,190,675 (-)Ensembl
Ensembl Acc Id: ENST00000825399
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1656,102,190 - 56,191,772 (-)Ensembl
Ensembl Acc Id: ENST00000825400
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1656,101,090 - 56,189,592 (-)Ensembl
Ensembl Acc Id: ENST00000825401
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1656,101,095 - 56,189,596 (-)Ensembl
Ensembl Acc Id: ENST00000825402
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1656,101,090 - 56,189,584 (-)Ensembl
Ensembl Acc Id: ENST00000825403
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1656,101,096 - 56,189,588 (-)Ensembl
Ensembl Acc Id: ENST00000825404
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1656,139,924 - 56,189,592 (-)Ensembl
Ensembl Acc Id: ENST00000825405
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1656,142,798 - 56,191,613 (-)Ensembl
Ensembl Acc Id: ENST00000825406
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1656,143,698 - 56,191,826 (-)Ensembl
Ensembl Acc Id: ENST00000825407
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1656,143,680 - 56,191,631 (-)Ensembl
Ensembl Acc Id: ENST00000825408
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1656,143,709 - 56,191,609 (-)Ensembl
Ensembl Acc Id: ENST00000825409
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1656,143,707 - 56,191,605 (-)Ensembl
Ensembl Acc Id: ENST00000825410
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1656,143,680 - 56,189,597 (-)Ensembl
Ensembl Acc Id: ENST00000825411
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1656,143,698 - 56,189,601 (-)Ensembl
Ensembl Acc Id: ENST00000825412
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1656,143,707 - 56,189,598 (-)Ensembl
Ensembl Acc Id: ENST00000825413
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1656,143,695 - 56,188,125 (-)Ensembl
Ensembl Acc Id: ENST00000825414
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1656,143,707 - 56,188,111 (-)Ensembl
Ensembl Acc Id: ENST00000825415
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1656,143,698 - 56,188,101 (-)Ensembl
Ensembl Acc Id: ENST00000825416
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1656,143,698 - 56,188,086 (-)Ensembl
Ensembl Acc Id: ENST00000825417
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1656,143,705 - 56,186,216 (-)Ensembl
Ensembl Acc Id: ENST00000825418
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1656,154,085 - 56,189,601 (-)Ensembl
RefSeq Acc Id: NR_027078
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381656,092,987 - 56,191,094 (-)NCBI
T2T-CHM13v2.01661,888,031 - 61,986,139 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC GNAO1-DT COSMIC
Ensembl Genes ENSG00000246379 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000501259 ENTREZGENE
GTEx ENSG00000246379 GTEx
HGNC ID HGNC:27543 ENTREZGENE
Human Proteome Map GNAO1-DT Human Proteome Map
NCBI Gene LOC283856 ENTREZGENE
RNAcentral URS0000086B8A RNACentral
  URS00001004A4 RNACentral
  URS00001F7DF8 RNACentral
  URS000023618B RNACentral
  URS0000DB7615 RNACentral
  URS0000EEBA31 RNACentral
  URS0000EED6C5 RNACentral
  URS0000EEEA09 RNACentral
  URS0000EEF34F RNACentral
  URS0000EF072A RNACentral
  URS0000EF3039 RNACentral
  URS0000EF4A98 RNACentral
  URS0000EF542E RNACentral
  URS0000EF56E7 RNACentral
  URS0000EF57CF RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-05-03 GNAO1-DT  GNAO1 divergent transcript  AC040168.1  novel transcript  Symbol and/or name change 19259463 PROVISIONAL
2020-06-25 AC040168.1  novel transcript  LOC283856  uncharacterized LOC283856  Symbol and/or name change 19259462 PROVISIONAL
2020-06-18 LOC283856  uncharacterized LOC283856  AC040168.1  novel transcript  Symbol and/or name change 5135510 APPROVED