DEPTOR-AS1 (DEPTOR antisense RNA 1) - Rat Genome Database

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Pathways
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Gene: DEPTOR-AS1 (DEPTOR antisense RNA 1) Homo sapiens
Analyze
Symbol: DEPTOR-AS1 (Ensembl: AP005717.1)
Name: DEPTOR antisense RNA 1 (Ensembl:novel transcript)
RGD ID: 16557955
Description:
Type: lncrna
Previously known as: AP005717.1
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl8119,867,419 - 119,874,488 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:188
Count of miRNA genes:182
Interacting mature miRNAs:188
Transcripts:ENST00000500705
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2 2 4 2 2
Low 91 11 781 13 111 5 433 368 197 88 264 640 10 19 387 1
Below cutoff 2046 1660 765 430 821 289 3237 1449 3005 284 1031 695 150 936 2015 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000500705
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl8119,867,419 - 119,874,488 (-)Ensembl
RefSeq Acc Id: ENST00000523563
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl8119,872,478 - 119,874,483 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC DEPTOR-AS1 COSMIC
Ensembl Genes ENSG00000245330 Ensembl
GTEx ENSG00000245330 GTEx
Human Proteome Map DEPTOR-AS1 Human Proteome Map


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-06-14 DEPTOR-AS1  DEPTOR antisense RNA 1  AP005717.1  novel transcript  Symbol and/or name change 19259463 PROVISIONAL