AL162431.1 (novel transcript) - Rat Genome Database

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Gene: AL162431.1 (novel transcript) Homo sapiens
Analyze
Symbol: AL162431.1
Name: novel transcript
RGD ID: 16557724
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1180,944,042 - 180,976,482 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:96
Count of miRNA genes:92
Interacting mature miRNAs:94
Transcripts:ENST00000358073, ENST00000457152
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 16 19 2 2 4
Low 2168 2222 1315 297 1473 170 4043 1823 3470 350 1369 1530 140 1062 2638 2
Below cutoff 261 715 388 305 417 274 308 368 234 66 73 76 30 140 149 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000358073
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1180,944,042 - 180,976,482 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL162431.1 COSMIC
Ensembl Genes ENSG00000243155 Ensembl
GTEx ENSG00000243155 GTEx
Human Proteome Map AL162431.1 Human Proteome Map