AF186996.2 (pseudogene similar to part of myosin light chain kinase (MYLK)) - Rat Genome Database

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Gene: AF186996.2 (pseudogene similar to part of myosin light chain kinase (MYLK)) Homo sapiens
Analyze
Symbol: AF186996.2
Name: pseudogene similar to part of myosin light chain kinase (MYLK)
RGD ID: 16557581
Description:
Type: processed_pseudogene
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl3125,681,305 - 125,681,453 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:267
Count of miRNA genes:235
Interacting mature miRNAs:254
Transcripts:ENST00000485294, ENST00000579826
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 42 42 35 42
Low 38 32 118 51 13 51 490 438 357 11 406 101 24 464
Below cutoff 205 156 223 86 52 79 338 224 881 31 128 173 7 100 255 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000485294
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3125,681,305 - 125,681,453 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AF186996.2 COSMIC
Ensembl Genes ENSG00000242001 Ensembl
GTEx ENSG00000242001 GTEx
Human Proteome Map AF186996.2 Human Proteome Map