AC098820.1 (novel transcript) - Rat Genome Database

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Gene: AC098820.1 (novel transcript) Homo sapiens
Analyze
Symbol: AC098820.1
Name: novel transcript
RGD ID: 16557513
Description:
Type: lncrna
Previously known as: AC098820.2; AC098820.3; AC098820.4
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl2216,483,032 - 216,487,196 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:893
Count of miRNA genes:619
Interacting mature miRNAs:702
Transcripts:ENST00000414135, ENST00000431856, ENST00000438978, ENST00000453157
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 207 62 529 84 357 48 299 84 685 169 390 492 46 6 131 3
Below cutoff 1685 1596 976 382 941 279 2168 1016 2658 188 869 886 105 653 1312

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000414135
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2216,483,032 - 216,487,196 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC098820.1 COSMIC
Ensembl Genes ENSG00000241520 Ensembl
GTEx ENSG00000241520 GTEx
Human Proteome Map AC098820.1 Human Proteome Map


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-03 AC098820.1  novel transcript  AC098820.2  novel transcript  Symbol and/or name change 19259462 PROVISIONAL
2020-08-20 AC098820.2  novel transcript  AC098820.4  novel transcript  Symbol and/or name change 19259462 PROVISIONAL
2020-02-07 AC098820.4  novel transcript  AC098820.3  novel transcript  Symbol and/or name change 19259462 PROVISIONAL