AC017015.1 (SET nuclear oncogene (SET) pseudogene) - Rat Genome Database

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Gene: AC017015.1 (SET nuclear oncogene (SET) pseudogene) Homo sapiens
Analyze
Symbol: AC017015.1
Name: SET nuclear oncogene (SET) pseudogene
RGD ID: 16557355
Description:
Type: processed_pseudogene
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl381,612,790 - 81,613,075 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:128
Count of miRNA genes:126
Interacting mature miRNAs:127
Transcripts:ENST00000477387
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 22 93 22 5 68 5 93 21 19 6 38 39 65 50
Below cutoff 201 457 230 80 137 56 752 301 293 37 194 181 24 324 435 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000477387
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl381,612,790 - 81,613,075 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC017015.1 COSMIC
Ensembl Genes ENSG00000240404 Ensembl
GTEx ENSG00000240404 GTEx
Human Proteome Map AC017015.1 Human Proteome Map