AL590729.1 (novel transcript) - Rat Genome Database

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Gene: AL590729.1 (novel transcript) Homo sapiens
Analyze
Symbol: AL590729.1
Name: novel transcript
RGD ID: 16557008
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl129,223,933 - 29,224,816 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:277
Count of miRNA genes:241
Interacting mature miRNAs:252
Transcripts:ENST00000427046
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 46
Low 299 140 578 152 521 90 894 120 387 86 772 668 69 262 461 1
Below cutoff 1751 1808 958 354 699 262 2857 1562 2032 235 491 736 93 850 1882 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000427046
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl129,223,933 - 29,224,816 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL590729.1 COSMIC
Ensembl Genes ENSG00000237934 Ensembl
GTEx ENSG00000237934 GTEx
Human Proteome Map AL590729.1 Human Proteome Map