AC004906.1 (novel transcript, antisense to CARD11) - Rat Genome Database

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Gene: AC004906.1 (novel transcript, antisense to CARD11) Homo sapiens
Analyze
Symbol: AC004906.1
Name: novel transcript, antisense to CARD11
RGD ID: 16556795
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl72,944,035 - 2,947,091 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:73
Count of miRNA genes:73
Interacting mature miRNAs:73
Transcripts:ENST00000423194
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 52 2
Low 61 73 9 3 410 3 1 3 1 25 379 33 1 1
Below cutoff 453 688 395 143 865 91 631 137 561 117 294 606 58 255 340

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000423194
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl72,944,035 - 2,947,091 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC004906.1 COSMIC
Ensembl Genes ENSG00000237286 Ensembl
GTEx ENSG00000237286 GTEx
Human Proteome Map AC004906.1 Human Proteome Map