AL445465.1 (novel transcript) - Rat Genome Database

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Gene: AL445465.1 (novel transcript) Homo sapiens
Analyze
Symbol: AL445465.1
Name: novel transcript
RGD ID: 16556762
Description:
Type: lncrna
Previously known as: AL445465.2
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl675,357,214 - 75,399,300 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:485
Count of miRNA genes:205
Interacting mature miRNAs:218
Transcripts:ENST00000415457, ENST00000419709, ENST00000440220, ENST00000588761, ENST00000591821, ENST00000609544
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1
Low 2 11 2 1 2 2 2 2 1 4 352 9 1 1
Below cutoff 1093 1329 458 87 183 58 1387 1112 730 83 408 660 32 506 992 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000415457
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl675,357,244 - 75,363,014 (+)Ensembl
RefSeq Acc Id: ENST00000419709
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl675,360,849 - 75,386,380 (+)Ensembl
RefSeq Acc Id: ENST00000440220
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl675,357,292 - 75,363,024 (+)Ensembl
RefSeq Acc Id: ENST00000588761
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl675,357,225 - 75,363,014 (+)Ensembl
RefSeq Acc Id: ENST00000591821
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl675,357,214 - 75,363,024 (+)Ensembl
RefSeq Acc Id: ENST00000609544
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl675,358,300 - 75,361,894 (+)Ensembl
RefSeq Acc Id: ENST00000625815
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl675,357,364 - 75,399,300 (+)Ensembl
RefSeq Acc Id: ENST00000628384
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl675,360,812 - 75,367,662 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL445465.1 COSMIC
Ensembl Genes ENSG00000237174 Ensembl
GTEx ENSG00000237174 GTEx
Human Proteome Map AL445465.1 Human Proteome Map


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-08-20 AL445465.1  novel transcript  AL445465.2  novel transcript  Symbol and/or name change 19259462 PROVISIONAL
2020-02-07 AL445465.2  novel transcript  AL445465.1  novel transcript  Symbol and/or name change 19259462 PROVISIONAL