AL357833.1 (novel transcript) - Rat Genome Database

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Gene: AL357833.1 (novel transcript) Homo sapiens
Analyze
Symbol: AL357833.1
Name: novel transcript
RGD ID: 16556677
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl103,532,094 - 3,556,314 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:182
Count of miRNA genes:175
Interacting mature miRNAs:177
Transcripts:ENST00000413757, ENST00000426811
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 1 6 5 5 1 1 1 328 3 2
Below cutoff 75 112 59 30 45 25 349 66 287 33 103 55 6 164 190

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000413757
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl103,535,112 - 3,536,857 (-)Ensembl
RefSeq Acc Id: ENST00000426811
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl103,532,094 - 3,537,031 (-)Ensembl
RefSeq Acc Id: ENST00000654955
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl103,536,414 - 3,556,314 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL357833.1 COSMIC
Ensembl Genes ENSG00000236892 Ensembl
GTEx ENSG00000236892 GTEx
Human Proteome Map AL357833.1 Human Proteome Map