AL592309.1 (novel transcript) - Rat Genome Database

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Gene: AL592309.1 (novel transcript) Homo sapiens
Analyze
Symbol: AL592309.1
Name: novel transcript
RGD ID: 16556392
Description:
Type: lncrna
Previously known as: AL592309.2
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl121,415,898 - 21,417,492 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:241
Count of miRNA genes:228
Interacting mature miRNAs:235
Transcripts:ENST00000423921, ENST00000444647
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 8 14 3 1 10 2 14 2 1
Below cutoff 142 180 125 26 95 17 295 106 336 16 334 110 13 73 204

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000423921
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl121,416,322 - 21,417,374 (+)Ensembl
RefSeq Acc Id: ENST00000444647
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl121,415,898 - 21,417,492 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL592309.1 COSMIC
Ensembl Genes ENSG00000236009 Ensembl
GTEx ENSG00000236009 GTEx
Human Proteome Map AL592309.1 Human Proteome Map


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-02-23 AL592309.1  novel transcript  AL592309.2  novel transcript  Symbol and/or name change 19259462 PROVISIONAL