AF064858.1 (novel transcript) - Rat Genome Database

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Gene: AF064858.1 (novel transcript) Homo sapiens
Analyze
Symbol: AF064858.1
Name: novel transcript
RGD ID: 16556357
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl2138,988,569 - 39,062,894 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:353
Count of miRNA genes:328
Interacting mature miRNAs:349
Transcripts:ENST00000417335
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 25 87 7 3 201 3 42 2 20 6 93 16
Low 1323 1646 931 271 799 199 2943 921 2224 182 1161 1186 77 616 2023 2
Below cutoff 1041 1213 748 327 427 242 1288 1243 1443 184 245 264 92 583 735 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000417335
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2138,988,575 - 39,006,562 (-)Ensembl
RefSeq Acc Id: ENST00000419664
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2139,006,648 - 39,011,329 (-)Ensembl
RefSeq Acc Id: ENST00000652155
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2138,998,651 - 39,062,894 (-)Ensembl
RefSeq Acc Id: ENST00000655642
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2138,988,569 - 39,006,853 (-)Ensembl
RefSeq Acc Id: ENST00000663162
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2138,988,694 - 39,005,822 (-)Ensembl
RefSeq Acc Id: ENST00000666868
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2139,005,897 - 39,007,134 (-)Ensembl
RefSeq Acc Id: ENST00000689085
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2139,005,882 - 39,006,877 (-)Ensembl
RefSeq Acc Id: ENST00000691476
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2139,005,882 - 39,006,877 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AF064858.1 COSMIC
Ensembl Genes ENSG00000235888 Ensembl
GTEx ENSG00000235888 GTEx
Human Proteome Map AF064858.1 Human Proteome Map