AC114814.2 (novel transcript) - Rat Genome Database

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Gene: AC114814.2 (novel transcript) Homo sapiens
Analyze
Symbol: AC114814.2
Name: novel transcript
RGD ID: 16556187
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Previously known as: AC114814.3
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382235,177,897 - 235,178,907 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2235,177,896 - 235,178,905 (+)EnsemblGRCh38hg38GRCh38
Cytogenetic Map2q37.2NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:120
Count of miRNA genes:117
Interacting mature miRNAs:120
Transcripts:ENST00000449362
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 35
Low 1 3 1 1 15 2 10 322 3 6 7
Below cutoff 114 77 60 15 22 9 405 68 544 35 120 103 8 179 211

Sequence

Nucleotide Sequences
RefSeq Transcripts XR_007088133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC114814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000449362
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2235,177,896 - 235,178,905 (+)Ensembl
RefSeq Acc Id: XR_007088133
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382235,177,897 - 235,178,907 (+)NCBI

Additional Information

Database Acc Id Source(s)
COSMIC AC114814.2 COSMIC
Ensembl Genes ENSG00000235293 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000449362 ENTREZGENE
GTEx ENSG00000235293 GTEx
Human Proteome Map AC114814.2 Human Proteome Map
NCBI Gene LOC124907998 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-08-20 AC114814.2  novel transcript  AC114814.3  novel transcript  Symbol and/or name change 19259462 PROVISIONAL