Z82188.2 (novel transcript) - Rat Genome Database

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Gene: Z82188.2 (novel transcript) Homo sapiens
Analyze
Symbol: Z82188.2
Name: novel transcript
RGD ID: 16556167
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl2237,166,757 - 37,182,850 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:282
Count of miRNA genes:264
Interacting mature miRNAs:282
Transcripts:ENST00000419128
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 1 6
Low 162 161 177 50 741 49 83 32 246 65 422 244 10 23 30 3 1
Below cutoff 611 560 462 196 576 156 618 367 834 163 372 487 44 189 343 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000419128
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2237,166,757 - 37,182,850 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC Z82188.2 COSMIC
Ensembl Genes ENSG00000235237 Ensembl
GTEx ENSG00000235237 GTEx
Human Proteome Map Z82188.2 Human Proteome Map