AL591848.1 (novel transcript) - Rat Genome Database

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Gene: AL591848.1 (novel transcript) Homo sapiens
Analyze
Symbol: AL591848.1
Name: novel transcript
RGD ID: 16556090
Description:
Type: lncrna
Previously known as: AL591848.2
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1246,690,047 - 246,691,821 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:215
Count of miRNA genes:205
Interacting mature miRNAs:214
Transcripts:ENST00000442712
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 1 2 2 2 4 2
Low 489 54 302 34 152 32 333 321 917 55 533 86 3 47 277 2
Below cutoff 1295 769 542 201 330 120 1654 1114 1874 173 455 524 84 505 1110

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000442712
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1246,690,047 - 246,691,821 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL591848.1 COSMIC
Ensembl Genes ENSG00000235021 Ensembl
GTEx ENSG00000235021 GTEx
Human Proteome Map AL591848.1 Human Proteome Map


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-03 AL591848.1  novel transcript  AL591848.2  novel transcript  Symbol and/or name change 19259462 PROVISIONAL