MTCO1P58 (MT-CO1 pseudogene 58) - Rat Genome Database

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Gene: MTCO1P58 (MT-CO1 pseudogene 58) Homo sapiens
Analyze
Symbol: MTCO1P58 (Ensembl: AC008134.1)
Name: MT-CO1 pseudogene 58 (Ensembl:pseudogene similar to part of mitochondrially encoded cytochrome c oxidase I MT-CO1)
RGD ID: 16555964
Description:
Type: processed_pseudogene
Previously known as: AC008134.1; pseudogene similar to part of mitochondrially encoded cytochrome c oxidase I MT-CO1
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl3171,534,423 - 171,534,615 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:150
Count of miRNA genes:147
Interacting mature miRNAs:150
Transcripts:ENST00000420943
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 11 20 4 2 6 2 13 13 25 8 14 5 1 10
Below cutoff 59 63 29 9 22 4 87 70 126 6 43 25 5 25 61

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000420943
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3171,534,423 - 171,534,615 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC MTCO1P58 COSMIC
Ensembl Genes ENSG00000234594 Ensembl
GTEx ENSG00000234594 GTEx
Human Proteome Map MTCO1P58 Human Proteome Map


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-11-28 MTCO1P58  MT-CO1 pseudogene 58  AC008134.1  pseudogene similar to part of mitochondrially encoded cytochrome c oxidase I MT-CO1  Symbol and/or name change 19259463 PROVISIONAL