AL513174.1 (acyl-CoA synthetase medium-chain family member 1 (ACSM1) pseudogene) - Rat Genome Database

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Gene: AL513174.1 (acyl-CoA synthetase medium-chain family member 1 (ACSM1) pseudogene) Homo sapiens
Analyze
Symbol: AL513174.1
Name: acyl-CoA synthetase medium-chain family member 1 (ACSM1) pseudogene
RGD ID: 16555902
Description:
Type: unprocessed_pseudogene
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1080,233,664 - 80,245,367 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:145
Count of miRNA genes:139
Interacting mature miRNAs:145
Transcripts:ENST00000423182
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 5
Low 159 92 34 25 40 29 60 63 60 40 600 95 21 42 1
Below cutoff 1638 1042 610 272 309 193 1531 808 1595 173 623 617 84 594 972 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000423182
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1080,233,664 - 80,245,367 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL513174.1 COSMIC
Ensembl Genes ENSG00000234382 Ensembl
GTEx ENSG00000234382 GTEx
Human Proteome Map AL513174.1 Human Proteome Map