LINC03083 (long intergenic non-protein coding RNA 3083) - Rat Genome Database

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Gene: LINC03083 (long intergenic non-protein coding RNA 3083) Homo sapiens
Analyze
Symbol: LINC03083 (Ensembl: AL133465.1)
Name: long intergenic non-protein coding RNA 3083 (Ensembl:novel transcript)
RGD ID: 16555823
Description:
Type: lncrna
Previously known as: AL133465.1; novel transcript
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl2020,970,448 - 20,972,562 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:192
Count of miRNA genes:173
Interacting mature miRNAs:175
Transcripts:ENST00000432942
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system adipose tissue appendage
High
Medium 1 1 1 44
Low 1 20 1 9 701 2 5 6 2
Below cutoff 47 34 52 3 24 3 75 42 1471 9 82 34 14 49

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000432942
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2020,970,448 - 20,972,562 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC LINC03083 COSMIC
Ensembl Genes ENSG00000234104 Ensembl
GTEx ENSG00000234104 GTEx
Human Proteome Map LINC03083 Human Proteome Map


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-12-26 LINC03083  long intergenic non-protein coding RNA 3083  AL133465.1  novel transcript  Symbol and/or name change 19259463 PROVISIONAL