AC074117.1 (novel transcript, antisense to GTF3C2 and EIF2B4) - Rat Genome Database

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Gene: AC074117.1 (novel transcript, antisense to GTF3C2 and EIF2B4) Homo sapiens
Analyze
Symbol: AC074117.1
Name: novel transcript, antisense to GTF3C2 and EIF2B4
RGD ID: 16555814
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl227,356,246 - 27,367,622 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:282
Count of miRNA genes:248
Interacting mature miRNAs:261
Transcripts:ENST00000412749, ENST00000447070, ENST00000453289
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component
High
Medium 178 49 558 40 258 43 323 71 271 68 492 708 10 32 113 2
Low 2258 2851 1165 581 1625 420 4033 2105 3393 349 956 902 162 1172 2675 2
Below cutoff 2 85 1 1 67 2 19 60 2 8 1 3 1 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000412749
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl227,357,188 - 27,367,622 (+)Ensembl
RefSeq Acc Id: ENST00000447070
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl227,356,246 - 27,360,256 (+)Ensembl
RefSeq Acc Id: ENST00000453289
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl227,357,140 - 27,358,190 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC074117.1 COSMIC
Ensembl Genes ENSG00000234072 Ensembl
GTEx ENSG00000234072 GTEx
Human Proteome Map AC074117.1 Human Proteome Map