AL158151.2 (novel transcript) - Rat Genome Database

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Gene: AL158151.2 (novel transcript) Homo sapiens
Analyze
Symbol: AL158151.2
Name: novel transcript
RGD ID: 16555810
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl9129,097,854 - 129,100,266 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:661
Count of miRNA genes:475
Interacting mature miRNAs:535
Transcripts:ENST00000408594, ENST00000434250
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 1124 712 808 315 309 241 1494 724 1294 131 945 628 76 538 939 1
Below cutoff 926 1188 591 177 464 117 1615 1045 1520 149 258 576 65 470 1118 3

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000434250
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl9129,097,854 - 129,100,266 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL158151.2 COSMIC
Ensembl Genes ENSG00000234055 Ensembl
GTEx ENSG00000234055 GTEx
Human Proteome Map AL158151.2 Human Proteome Map