AL157834.2 (novel transcript, antisense to C10orf129) - Rat Genome Database

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Gene: AL157834.2 (novel transcript, antisense to C10orf129) Homo sapiens
Analyze
Symbol: AL157834.2
Name: novel transcript, antisense to C10orf129
RGD ID: 16555804
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1095,228,243 - 95,231,144 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:165
Count of miRNA genes:141
Interacting mature miRNAs:143
Transcripts:ENST00000451737
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component
High
Medium 1 78 1
Low 98 101 1040 33 495 32 286 17 948 109 500 628 4 1 67 34 1
Below cutoff 1198 1490 397 264 600 169 2110 864 2032 199 514 640 103 802 1270 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000451737
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1095,228,243 - 95,231,144 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL157834.2 COSMIC
Ensembl Genes ENSG00000234026 Ensembl
GTEx ENSG00000234026 GTEx
Human Proteome Map AL157834.2 Human Proteome Map