AP000547.1 (phosphoinositide-3-kinase, catalytic, alpha polypeptide (PIK3CA) pseudogene) - Rat Genome Database

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Gene: AP000547.1 (phosphoinositide-3-kinase, catalytic, alpha polypeptide (PIK3CA) pseudogene) Homo sapiens
Analyze
Symbol: AP000547.1
Name: phosphoinositide-3-kinase, catalytic, alpha polypeptide (PIK3CA) pseudogene
RGD ID: 16555796
Description:
Type: unprocessed_pseudogene
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl2216,572,027 - 16,574,637 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:346
Count of miRNA genes:311
Interacting mature miRNAs:325
Transcripts:ENST00000408157, ENST00000454360
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 1 1 1
Low 1 8 10 1 3
Below cutoff 163 176 159 36 91 16 374 128 484 26 226 148 20 98 225

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000454360
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2216,572,027 - 16,574,637 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AP000547.1 COSMIC
Ensembl Genes ENSG00000233995 Ensembl
GTEx ENSG00000233995 GTEx
Human Proteome Map AP000547.1 Human Proteome Map