AC009970.1 (novel transcript) - Rat Genome Database

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Gene: AC009970.1 (novel transcript) Homo sapiens
Analyze
Symbol: AC009970.1
Name: novel transcript
RGD ID: 16555783
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl260,495,686 - 60,499,964 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:381
Count of miRNA genes:359
Interacting mature miRNAs:370
Transcripts:ENST00000444873
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 1 68 1
Low 112 17 16 23 398 6 814 5 30 7 86 78 17 2 388
Below cutoff 619 206 243 137 364 33 617 141 274 64 419 348 104 66 299

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000444873
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl260,495,686 - 60,499,964 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC009970.1 COSMIC
Ensembl Genes ENSG00000233953 Ensembl
GTEx ENSG00000233953 GTEx
Human Proteome Map AC009970.1 Human Proteome Map