EPC1-AS2 (EPC1 antisense RNA 2) - Rat Genome Database

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Gene: EPC1-AS2 (EPC1 antisense RNA 2) Homo sapiens
Analyze
Symbol: EPC1-AS2 (Ensembl: AL391839.2)
Name: EPC1 antisense RNA 2 (Ensembl:novel transcript, antisense to EPC1)
RGD ID: 16555739
Description:
Type: lncrna
Previously known as: AL391839.2; novel transcript, antisense to EPC1
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1032,346,499 - 32,347,179 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:414
Count of miRNA genes:377
Interacting mature miRNAs:413
Transcripts:ENST00000412085
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 16 7
Low 93 18 60 41 424 41 186 22 47 40 118 84 5 5 7 1
Below cutoff 76 11 116 82 90 85 82 42 85 134 119 155 3 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000412085
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1032,346,499 - 32,347,179 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC EPC1-AS2 COSMIC
Ensembl Genes ENSG00000233825 Ensembl
GTEx ENSG00000233825 GTEx
Human Proteome Map EPC1-AS2 Human Proteome Map


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-12-05 EPC1-AS2  EPC1 antisense RNA 2  AL391839.2  novel transcript, antisense to EPC1  Symbol and/or name change 19259463 PROVISIONAL