AL591479.1 (CDRT15 protein pseudogene) - Rat Genome Database

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Gene: AL591479.1 (CDRT15 protein pseudogene) Homo sapiens
Analyze
Symbol: AL591479.1
Name: CDRT15 protein pseudogene
RGD ID: 16555723
Description:
Type: unprocessed_pseudogene
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl966,253,424 - 66,254,464 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1091
Count of miRNA genes:642
Interacting mature miRNAs:734
Transcripts:ENST00000417001, ENST00000594172
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 19 1
Low 73 22 430 139 279 114 774 40 1187 147 682 327 31 28 529 1
Below cutoff 1381 1489 1038 396 666 270 2480 1339 2344 209 599 934 132 798 1591 3

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000417001
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl966,253,424 - 66,254,464 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL591479.1 COSMIC
Ensembl Genes ENSG00000233765 Ensembl
GTEx ENSG00000233765 GTEx
Human Proteome Map AL591479.1 Human Proteome Map