AL138789.1 (novel transcript) - Rat Genome Database

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Gene: AL138789.1 (novel transcript) Homo sapiens
Analyze
Symbol: AL138789.1
Name: novel transcript
RGD ID: 16555672
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl168,479,129 - 68,483,539 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:133
Count of miRNA genes:130
Interacting mature miRNAs:131
Transcripts:ENST00000425820
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 15 2 1 4 2 2 1 12 16 4
Low 234 12 53 41 493 39 302 14 70 45 412 172 6 1 39 2
Below cutoff 745 280 362 171 381 97 1284 285 851 87 418 370 76 234 708 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000425820
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl168,479,129 - 68,483,539 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL138789.1 COSMIC
Ensembl Genes ENSG00000233589 Ensembl
GTEx ENSG00000233589 GTEx
Human Proteome Map AL138789.1 Human Proteome Map