AL136368.1 (novel transcript) - Rat Genome Database

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Gene: AL136368.1 (novel transcript) Homo sapiens
Analyze
Symbol: AL136368.1
Name: novel transcript
RGD ID: 16555346
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl10110,869,743 - 110,871,594 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:301
Count of miRNA genes:274
Interacting mature miRNAs:283
Transcripts:ENST00000416249
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 2 115 3 1 2 6 18 6 1
Low 1906 1307 1242 283 1610 139 2574 667 1242 218 1270 1408 148 899 1309 1
Below cutoff 461 1338 383 263 175 247 1228 959 1946 148 114 126 22 286 966 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000416249
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl10110,869,743 - 110,871,594 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL136368.1 COSMIC
Ensembl Genes ENSG00000232470 Ensembl
GTEx ENSG00000232470 GTEx
Human Proteome Map AL136368.1 Human Proteome Map