AL606534.2 (novel transcript, antisense to CEP170) - Rat Genome Database

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Gene: AL606534.2 (novel transcript, antisense to CEP170) Homo sapiens
Analyze
Symbol: AL606534.2
Name: novel transcript, antisense to CEP170
RGD ID: 16555230
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1243,164,638 - 243,169,445 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:76
Count of miRNA genes:60
Interacting mature miRNAs:60
Transcripts:ENST00000422938, ENST00000437499
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 4 3 7 30 21 3 23 3 294 11 4 11
Below cutoff 228 251 229 39 224 30 551 163 448 50 184 324 11 196 301

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000422938
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1243,164,672 - 243,169,387 (+)Ensembl
RefSeq Acc Id: ENST00000437499
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1243,164,638 - 243,169,445 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL606534.2 COSMIC
Ensembl Genes ENSG00000232085 Ensembl
GTEx ENSG00000232085 GTEx
Human Proteome Map AL606534.2 Human Proteome Map