AC235565.1 (preferentially expressed antigen in melanoma (PRAME) pseudogene) - Rat Genome Database

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Gene: AC235565.1 (preferentially expressed antigen in melanoma (PRAME) pseudogene) Homo sapiens
Analyze
Symbol: AC235565.1
Name: preferentially expressed antigen in melanoma (PRAME) pseudogene
RGD ID: 16555075
Description:
Type: unitary_pseudogene
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 EnsemblX102,425,343 - 102,428,080 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:157
Count of miRNA genes:154
Interacting mature miRNAs:157
Transcripts:ENST00000456962
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 1 1
Below cutoff 55 55 157 12 21 3 78 37 310 1 129 79 9 23 45

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000456962
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 EnsemblX102,425,343 - 102,428,080 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC235565.1 COSMIC
Ensembl Genes ENSG00000231590 Ensembl
GTEx ENSG00000231590 GTEx
Human Proteome Map AC235565.1 Human Proteome Map